Project State

Project Reference

See: .planning/PROJECT.md (updated 2026-02-11)

Core value: Produce a high-confidence, multi-evidence-backed ranked list of under-studied cilia/Usher candidate genes that is fully traceable — every gene's inclusion is explainable by specific evidence, and every gap is documented. Current focus: Phase 1 - Data Infrastructure

Current Position

Phase: 1 of 6 (Data Infrastructure) Plan: 0 of TBD in current phase Status: Ready to plan Last activity: 2026-02-11 — Roadmap created with 6 phases covering all 40 v1 requirements

Progress: [░░░░░░░░░░] 0%

Performance Metrics

Velocity:

Total plans completed: 0
Average duration: - min
Total execution time: 0.0 hours

By Phase:

Phase	Plans	Total	Avg/Plan
-	-	-	-

Recent Trend:

Last 5 plans: None yet
Trend: No data

Updated after each plan completion

Accumulated Context

Decisions

Decisions are logged in PROJECT.md Key Decisions table. Recent decisions affecting current work:

Python over R/Bioconductor for rich data integration ecosystem
Weighted rule-based scoring over ML for explainability
Public data only for reproducibility
Modular CLI scripts for flexibility during development

Pending Todos

None yet.

Blockers/Concerns