usher-exploring

Go to file

gbanyan ed21f18a98 fix(03-05): handle NULL columns and deprecated polars API in animal models

- Add NULL/empty column checks in fetch_ortholog_mapping
- Fix NULL handling in filter_sensory_phenotypes with is_not_null guard
- Replace deprecated str.concat with str.join
- Add explicit schema to empty DataFrames for consistency

2026-02-11 20:38:36 +08:00

.planning

docs(04): create phase plan for scoring and integration

2026-02-11 20:31:55 +08:00

config

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00

src/usher_pipeline

fix(03-05): handle NULL columns and deprecated polars API in animal models

2026-02-11 20:38:36 +08:00

tests

docs(03-04): complete subcellular localization evidence layer

2026-02-11 19:08:01 +08:00

.gitignore

feat(01-04): add CLI entry point with setup and info commands

2026-02-11 16:39:50 +08:00

pyproject.toml

feat(03-06): implement literature evidence models, PubMed fetch, and scoring

2026-02-11 19:00:20 +08:00