gbanyan d8009f1236 docs(03-04): complete subcellular localization evidence layer ...

- Created SUMMARY.md with full implementation details
- Updated STATE.md: progress 40%, 8/20 plans complete
- Documented 4 key decisions (evidence terminology, NULL semantics, embedded proteomics, evidence weighting)
- All verification criteria met: 17/17 tests pass, CLI functional, DuckDB integration complete

2026-02-11 19:08:01 +08:00

.planning

docs(03-04): complete subcellular localization evidence layer

2026-02-11 19:08:01 +08:00

config

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00

src/usher_pipeline

docs(03-04): complete subcellular localization evidence layer

2026-02-11 19:08:01 +08:00

tests

docs(03-04): complete subcellular localization evidence layer

2026-02-11 19:08:01 +08:00

.gitignore

feat(01-04): add CLI entry point with setup and info commands

2026-02-11 16:39:50 +08:00

pyproject.toml

feat(03-06): implement literature evidence models, PubMed fetch, and scoring

2026-02-11 19:00:20 +08:00

Description

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Python 100%