gbanyan
b63251a996
- scoring/integration.py: Use CTEs with GROUP BY gene_id to deduplicate all evidence tables before LEFT JOIN (gnomAD had 211K rows for 18K genes due to per-transcript data; annotation/localization also had dupes) - literature/transform.py: Deduplicate gene_symbols before PubMed queries to avoid querying the same symbol multiple times - evidence_cmd.py: Fix Polars .alias() error in literature summary display - Updated report results with full 6-layer scoring (44 HIGH, 7268 MEDIUM) - Validation PASSED: known Usher genes median percentile 86.9% Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
34 lines
659 B
YAML
34 lines
659 B
YAML
generated_at: '2026-02-15T20:47:53.707513+00:00'
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output_files:
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- candidates.tsv
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- candidates.parquet
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statistics:
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total_candidates: 19342
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high_count: 44
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medium_count: 7268
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low_count: 12030
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column_count: 22
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column_names:
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- gene_id
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- gene_symbol
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- gnomad_score
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- expression_score
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- annotation_score
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- localization_score
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- animal_model_score
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- literature_score
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- evidence_count
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- available_weight
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- weighted_sum
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- composite_score
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- quality_flag
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- gnomad_contribution
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- expression_contribution
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- annotation_contribution
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- localization_contribution
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- animal_model_contribution
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- literature_contribution
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- confidence_tier
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- supporting_layers
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- evidence_gaps
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