- scoring/integration.py: Use CTEs with GROUP BY gene_id to deduplicate
all evidence tables before LEFT JOIN (gnomAD had 211K rows for 18K
genes due to per-transcript data; annotation/localization also had dupes)
- literature/transform.py: Deduplicate gene_symbols before PubMed queries
to avoid querying the same symbol multiple times
- evidence_cmd.py: Fix Polars .alias() error in literature summary display
- Updated report results with full 6-layer scoring (44 HIGH, 7268 MEDIUM)
- Validation PASSED: known Usher genes median percentile 86.9%
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
gbanyan
b63251a996