gbanyan a2d6e97acf docs(06-01): complete negative controls and recall@k validation plan ...

Summary:
- Created negative_controls.py with 13 housekeeping genes
- Added recall@k metrics (absolute and percentage thresholds)
- Added per-source breakdown for OMIM vs SYSCILIA
- Updated STATE.md with Phase 6 progress and decisions

Plan Summary: .planning/phases/06-validation/06-01-SUMMARY.md

2026-02-12 04:43:59 +08:00

.planning

docs(06-01): complete negative controls and recall@k validation plan

2026-02-12 04:43:59 +08:00

config

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00

src/usher_pipeline

feat(06-02): export sensitivity analysis module from scoring package

2026-02-12 04:41:27 +08:00

tests

test(05-03): add CliRunner integration tests for report command

2026-02-12 04:07:34 +08:00

.gitignore

feat(01-04): add CLI entry point with setup and info commands

2026-02-11 16:39:50 +08:00

pyproject.toml

feat(05-02): implement visualization module with matplotlib/seaborn plots

2026-02-12 03:57:50 +08:00

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