gbanyan e4d71d0790 test(01-04): add integration tests verifying module wiring ...

- test_config_to_store_roundtrip: config -> PipelineStore -> save/load
- test_config_to_provenance: config -> ProvenanceTracker -> sidecar
- test_full_setup_flow_mocked: full setup with mocked mygene (fetch, map, validate, save, provenance)
- test_checkpoint_skip_flow: verify checkpoint-restart skips re-fetch
- test_setup_cli_help: CLI help output verification
- test_info_cli: info command with config display

All tests pass with mocked API calls (no external dependencies).

2026-02-11 16:42:13 +08:00

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