gbanyan 942aaf2ec3 feat(03-04): add localization CLI command and comprehensive tests ...

- Add localization subcommand to evidence command group
- Implement checkpoint-restart pattern for HPA download
- Display summary with evidence type distribution
- Create 17 unit and integration tests (all pass)
- Test HPA parsing, evidence classification, scoring, and DuckDB persistence
- Fix evidence type terminology (computational vs predicted) for consistency
- Mock HTTP calls in integration tests for reproducibility

2026-02-11 19:05:22 +08:00

.planning

docs(03): create phase plan

2026-02-11 18:46:28 +08:00

config

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00

src/usher_pipeline

feat(03-04): add localization CLI command and comprehensive tests

2026-02-11 19:05:22 +08:00

tests

feat(03-04): add localization CLI command and comprehensive tests

2026-02-11 19:05:22 +08:00

.gitignore

feat(01-04): add CLI entry point with setup and info commands

2026-02-11 16:39:50 +08:00

pyproject.toml

feat(03-06): implement literature evidence models, PubMed fetch, and scoring

2026-02-11 19:00:20 +08:00

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