usher-exploring

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gbanyan 70a5d6eff8 feat(04-02): implement positive control validation

- Create validation.py with known gene ranking validation
- validate_known_gene_ranking: PERCENT_RANK window function over all genes
- Computes median percentile, top quartile count/fraction for known genes
- generate_validation_report: human-readable text output with formatted table
- Update __init__.py to export run_qc_checks, validate_known_gene_ranking, generate_validation_report

2026-02-11 20:47:59 +08:00

.planning

docs(04-01): complete known gene compilation and weighted scoring plan

2026-02-11 20:44:09 +08:00

config

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00

src/usher_pipeline

feat(04-02): implement positive control validation

2026-02-11 20:47:59 +08:00

tests

docs(03-04): complete subcellular localization evidence layer