usher-exploring

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gbanyan 6645c59b0b feat(03-04): create localization evidence data model and processing

- Define LocalizationRecord model with HPA and proteomics fields
- Implement fetch_hpa_subcellular to download HPA bulk data
- Implement fetch_cilia_proteomics with curated reference gene sets
- Implement classify_evidence_type (experimental vs computational)
- Implement score_localization with cilia proximity scoring
- Implement process_localization_evidence end-to-end pipeline
- Create load_to_duckdb for persistence with provenance

2026-02-11 19:00:09 +08:00

.planning

docs(03): create phase plan

2026-02-11 18:46:28 +08:00

config

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00

src/usher_pipeline

feat(03-04): create localization evidence data model and processing

2026-02-11 19:00:09 +08:00

tests

test(02-02): add comprehensive gnomAD integration tests