gbanyan
6605ff0f2b
- gene_mapping: wrap mygene fetch_all generator in list() to fix len() error - gene_mapping: raise MAX_EXPECTED_GENES to 23000 (mygene DB growth) - setup_cmd: rename gene_universe columns to gene_id/gene_symbol for consistency with all downstream evidence layer code - gnomad: handle missing coverage columns in v4.1 constraint TSV - expression: fix HPA URL (v23.proteinatlas.org) and GTEx URL (v8 path) - expression: fix Polars pivot() API change (columns -> on), collect first - expression: handle missing GTEx tissues (Eye - Retina not in v8) - expression: ensure all expected columns exist even when sources unavailable - expression/load: safely check column existence before filtering - localization: fix HPA subcellular URL to v23 - animal_models: fix httpx stream response.read() before .text access - animal_models: increase infer_schema_length for HCOP and MGI TSV parsing Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>