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gbanyan 4a80a0398e feat(01-01): create Python package scaffold with config system

- pyproject.toml: installable package with bioinformatics dependencies
- Pydantic config schema with validation (ensembl_release >= 100, directory creation)
- YAML config loader with override support
- Default config with Ensembl 113, gnomAD v4.1
- 5 passing tests for config validation and hashing

2026-02-11 16:24:35 +08:00

.planning

docs(01-data-infrastructure): create phase plan

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config

feat(01-01): create Python package scaffold with config system

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src/usher_pipeline

feat(01-01): create Python package scaffold with config system

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tests

feat(01-01): create Python package scaffold with config system

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pyproject.toml

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00