usher-exploring

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gbanyan 46059874f2 feat(03-03): implement protein evidence layer with UniProt/InterPro integration

- Create protein features data model with domain, coiled-coil, TM, cilia motifs
- Implement fetch.py with UniProt REST API and InterPro API queries
- Implement transform.py with feature extraction, motif detection, normalization
- Implement load.py with DuckDB persistence and provenance tracking
- Add CLI protein command following evidence layer pattern
- Add comprehensive unit and integration tests (all passing)
- Handle NULL preservation and List(Null) edge case
- Add get_steps() method to ProvenanceTracker for test compatibility

2026-02-11 19:07:30 +08:00

.planning

docs(03-01): complete annotation completeness plan

2026-02-11 19:05:56 +08:00

config

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00

src/usher_pipeline

feat(03-03): implement protein evidence layer with UniProt/InterPro integration

2026-02-11 19:07:30 +08:00

tests

feat(03-03): implement protein evidence layer with UniProt/InterPro integration