Files
usher-exploring/tests/test_gene_mapping.py
gbanyan 0200395d9e feat(01-02): create mapping validation gates with tests
- Add MappingValidator with configurable success rate thresholds (min_success_rate, warn_threshold)
- Add validate_gene_universe for gene count, format, and duplicate checks
- Add save_unmapped_report for manual review output
- Implement 15 comprehensive tests with mocked mygene responses (no real API calls)
- Tests cover: successful mapping, notfound handling, uniprot list parsing, batching, validation gates, universe validation
2026-02-11 16:33:36 +08:00

9.8 KiB