gbanyan c10d59548f test(05-03): add CliRunner integration tests for report command ...

- Create test_report_cmd.py with 9 comprehensive tests
- Test fixtures: test_config (minimal YAML), populated_db (synthetic scored_genes data)
- Test coverage: help output, file generation, tier counts, visualizations, skip flags, custom thresholds, error handling, custom output directory
- Synthetic data design: 3 HIGH, 5 MEDIUM, 5 LOW, 4 EXCLUDED, 3 NULL composite_score
- All tests pass with isolated tmp_path DuckDB instances
- Fixed report_cmd.py tier threshold format (uppercase keys: HIGH/MEDIUM/LOW, composite_score field)
- Fixed write_candidate_output parameter name (filename_base not base_filename)

2026-02-12 04:07:34 +08:00

9.9 KiB

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