gbanyan 053f0d926b docs(03-05): complete animal model phenotype evidence layer plan ...

- SUMMARY.md: Ortholog-mapped animal evidence from MGI/ZFIN/IMPC
- Confidence-weighted scoring (mouse +0.4, zebrafish +0.3, IMPC +0.3)
- 14/14 tests passing: ortholog confidence, keyword filtering, NULL preservation
- Deviations: Schema mismatches, NULL handling, polars deprecations auto-fixed
- Duration: 10 minutes, 2 tasks, 8 files, 2 commits

2026-02-11 19:08:45 +08:00

.planning

docs(03-05): complete animal model phenotype evidence layer plan

2026-02-11 19:08:45 +08:00

config

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00

src/usher_pipeline

docs(03-04): complete subcellular localization evidence layer

2026-02-11 19:08:01 +08:00

tests

docs(03-04): complete subcellular localization evidence layer

2026-02-11 19:08:01 +08:00

.gitignore

feat(01-04): add CLI entry point with setup and info commands

2026-02-11 16:39:50 +08:00

pyproject.toml

feat(03-06): implement literature evidence models, PubMed fetch, and scoring

2026-02-11 19:00:20 +08:00

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