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gbanyan 0200395d9e feat(01-02): create mapping validation gates with tests

- Add MappingValidator with configurable success rate thresholds (min_success_rate, warn_threshold)
- Add validate_gene_universe for gene count, format, and duplicate checks
- Add save_unmapped_report for manual review output
- Implement 15 comprehensive tests with mocked mygene responses (no real API calls)
- Tests cover: successful mapping, notfound handling, uniprot list parsing, batching, validation gates, universe validation

2026-02-11 16:33:36 +08:00

.planning

docs(01-01): complete project scaffold and config system plan

2026-02-11 16:28:03 +08:00

config

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00

src/usher_pipeline

feat(01-02): create mapping validation gates with tests

2026-02-11 16:33:36 +08:00

tests

feat(01-02): create mapping validation gates with tests

2026-02-11 16:33:36 +08:00

pyproject.toml

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00