2 Commits

Author	SHA1	Message	Date
gbanyan	ed21f18a98	fix(03-05): handle NULL columns and deprecated polars API in animal models ... - Add NULL/empty column checks in fetch_ortholog_mapping - Fix NULL handling in filter_sensory_phenotypes with is_not_null guard - Replace deprecated str.concat with str.join - Add explicit schema to empty DataFrames for consistency	2026-02-11 20:38:36 +08:00
gbanyan	0e389c7e41	feat(03-05): implement animal model evidence fetch and transform ... - models.py: AnimalModelRecord with ortholog confidence, phenotype flags, and normalized scoring - fetch.py: Retrieve orthologs from HCOP, phenotypes from MGI/ZFIN/IMPC with retry - transform.py: Filter sensory/cilia-relevant phenotypes, score with confidence weighting - Ortholog confidence: HIGH (8+ sources), MEDIUM (4-7), LOW (1-3) - Scoring: mouse +0.4, zebrafish +0.3, IMPC +0.3, weighted by confidence - NULL preservation: no ortholog = NULL score (not zero)	2026-02-11 19:00:24 +08:00