gbanyan d13d58df8b Refactor: Replace scaffolding with working analysis scripts ...

- Add trio_analysis.py for trio-based variant analysis with de novo detection
- Add clinvar_acmg_annotate.py for ClinVar/ACMG annotation
- Add gwas_comprehensive.py with 201 SNPs across 18 categories
- Add pharmgkb_full_analysis.py for pharmacogenomics analysis
- Add gwas_trait_lookup.py for basic GWAS trait lookup
- Add pharmacogenomics.py for basic PGx analysis
- Remove unused scaffolding code (src/, configs/, docs/, tests/)
- Update README.md with new documentation

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

2025-12-01 22:36:02 +08:00

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