gbanyan d8009f1236 docs(03-04): complete subcellular localization evidence layer ...

- Created SUMMARY.md with full implementation details
- Updated STATE.md: progress 40%, 8/20 plans complete
- Documented 4 key decisions (evidence terminology, NULL semantics, embedded proteomics, evidence weighting)
- All verification criteria met: 17/17 tests pass, CLI functional, DuckDB integration complete

2026-02-11 19:08:01 +08:00

..

__init__.py

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00

test_animal_models_integration.py

feat(03-05): add animal model DuckDB loader, CLI, and comprehensive tests

2026-02-11 19:06:49 +08:00

test_animal_models.py

feat(03-05): add animal model DuckDB loader, CLI, and comprehensive tests

2026-02-11 19:06:49 +08:00

test_annotation_integration.py

feat(03-01): add annotation DuckDB loader, CLI command, and tests

2026-02-11 19:03:10 +08:00

test_annotation.py

feat(03-01): add annotation DuckDB loader, CLI command, and tests

2026-02-11 19:03:10 +08:00

test_api_client.py

feat(01-01): create base API client with retry and caching

2026-02-11 16:25:46 +08:00

test_config.py

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00

test_expression_integration.py

feat(03-03): implement protein evidence layer with UniProt/InterPro integration

2026-02-11 19:07:30 +08:00

test_expression.py

feat(03-03): implement protein evidence layer with UniProt/InterPro integration

2026-02-11 19:07:30 +08:00

test_gene_mapping.py

feat(01-02): create mapping validation gates with tests

2026-02-11 16:33:36 +08:00

test_gnomad_integration.py

test(02-02): add comprehensive gnomAD integration tests

2026-02-11 18:20:59 +08:00

test_gnomad.py

feat(02-01): add gnomAD transform pipeline and comprehensive tests

2026-02-11 18:14:41 +08:00

test_integration.py

test(01-04): add integration tests verifying module wiring

2026-02-11 16:42:13 +08:00

test_literature_integration.py

docs(03-04): complete subcellular localization evidence layer

2026-02-11 19:08:01 +08:00

test_literature.py

docs(03-04): complete subcellular localization evidence layer

2026-02-11 19:08:01 +08:00

test_localization_integration.py

feat(03-04): add localization CLI command and comprehensive tests

2026-02-11 19:05:22 +08:00

test_localization.py

feat(03-04): add localization CLI command and comprehensive tests

2026-02-11 19:05:22 +08:00

test_persistence.py

feat(01-03): create provenance tracker with comprehensive tests

2026-02-11 16:31:51 +08:00

test_protein_integration.py

feat(03-03): implement protein evidence layer with UniProt/InterPro integration

2026-02-11 19:07:30 +08:00

test_protein.py

feat(03-03): implement protein evidence layer with UniProt/InterPro integration

2026-02-11 19:07:30 +08:00