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gbanyan a2ef2125ba chore: complete v1.0 MVP milestone

Archive v1.0 milestone: 6 phases, 21 plans, 40/40 requirements.
Reorganize ROADMAP.md, evolve PROJECT.md, archive requirements.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

2026-02-12 21:31:43 +08:00

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Project State

Project Reference

See: .planning/PROJECT.md (updated 2026-02-12)

Core value: Produce a high-confidence, multi-evidence-backed ranked list of under-studied cilia/Usher candidate genes that is fully traceable — every gene's inclusion is explainable by specific evidence, and every gap is documented. Current focus: v1.0 MVP shipped — planning next milestone

Current Position

Milestone: v1.0 MVP — SHIPPED 2026-02-12 Status: All 6 phases complete, 21/21 plans, audited and archived

Performance Metrics

v1.0 Velocity:

Total plans completed: 21
Average duration: 4.6 min/plan
Total execution time: ~1.6 hours
Lines of code: 21,183 Python

Phase	Plans	Total	Avg/Plan
01 - Data Infrastructure	4/4	14 min	3.5 min
02 - Prototype Evidence Layer	2/2	8 min	4.0 min
03 - Core Evidence Layers	6/6	52 min	8.7 min
04 - Scoring Integration	3/3	10 min	3.3 min
05 - Output & CLI	3/3	12 min	4.0 min
06 - Validation	3/3	10 min	3.3 min

Accumulated Context

Decisions

All v1.0 decisions documented in PROJECT.md Key Decisions table.

Pending Todos

None.

Blockers/Concerns