gbanyan 5879ae9768 test(06-03): unit tests for all validation modules ...

- Created test_validation.py with 13 comprehensive tests
- create_synthetic_scored_db helper: designs scores for known genes high, housekeeping low
- Tests for negative controls:
  - test_compile_housekeeping_genes_structure
  - test_compile_housekeeping_genes_known_genes_present
  - test_validate_negative_controls_with_synthetic_data
  - test_validate_negative_controls_inverted_logic
- Tests for recall@k:
  - test_compute_recall_at_k
- Tests for sensitivity/perturbation:
  - test_perturb_weight_renormalizes
  - test_perturb_weight_large_negative
  - test_perturb_weight_invalid_layer
- Tests for validation report:
  - test_generate_comprehensive_validation_report_format
  - test_recommend_weight_tuning_all_pass
  - test_recommend_weight_tuning_positive_fail
  - test_recommend_weight_tuning_negative_fail
  - test_recommend_weight_tuning_sensitivity_fail
- All tests pass using synthetic DuckDB with tmp_path isolation

2026-02-12 04:50:17 +08:00

..

__init__.py

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00

test_animal_models_integration.py

feat(03-05): add animal model DuckDB loader, CLI, and comprehensive tests

2026-02-11 19:06:49 +08:00

test_animal_models.py

feat(03-05): add animal model DuckDB loader, CLI, and comprehensive tests

2026-02-11 19:06:49 +08:00

test_annotation_integration.py

feat(03-01): add annotation DuckDB loader, CLI command, and tests

2026-02-11 19:03:10 +08:00

test_annotation.py

feat(03-01): add annotation DuckDB loader, CLI command, and tests

2026-02-11 19:03:10 +08:00

test_api_client.py

feat(01-01): create base API client with retry and caching

2026-02-11 16:25:46 +08:00

test_config.py

feat(01-01): create Python package scaffold with config system

2026-02-11 16:24:35 +08:00

test_expression_integration.py

feat(03-03): implement protein evidence layer with UniProt/InterPro integration

2026-02-11 19:07:30 +08:00

test_expression.py

feat(03-03): implement protein evidence layer with UniProt/InterPro integration

2026-02-11 19:07:30 +08:00

test_gene_mapping.py

feat(01-02): create mapping validation gates with tests

2026-02-11 16:33:36 +08:00

test_gnomad_integration.py

test(02-02): add comprehensive gnomAD integration tests

2026-02-11 18:20:59 +08:00

test_gnomad.py

feat(02-01): add gnomAD transform pipeline and comprehensive tests

2026-02-11 18:14:41 +08:00

test_integration.py

test(01-04): add integration tests verifying module wiring

2026-02-11 16:42:13 +08:00

test_literature_integration.py

docs(03-04): complete subcellular localization evidence layer

2026-02-11 19:08:01 +08:00

test_literature.py

docs(03-04): complete subcellular localization evidence layer

2026-02-11 19:08:01 +08:00

test_localization_integration.py

feat(03-04): add localization CLI command and comprehensive tests

2026-02-11 19:05:22 +08:00

test_localization.py

feat(03-04): add localization CLI command and comprehensive tests

2026-02-11 19:05:22 +08:00

test_output.py

feat(05-01): add dual-format writer with provenance and tests

2026-02-12 03:59:26 +08:00

test_persistence.py

feat(01-03): create provenance tracker with comprehensive tests

2026-02-11 16:31:51 +08:00

test_protein_integration.py

feat(03-03): implement protein evidence layer with UniProt/InterPro integration

2026-02-11 19:07:30 +08:00

test_protein.py

feat(03-03): implement protein evidence layer with UniProt/InterPro integration

2026-02-11 19:07:30 +08:00

test_report_cmd.py

test(05-03): add CliRunner integration tests for report command

2026-02-12 04:07:34 +08:00

test_reproducibility.py

feat(05-02): implement reproducibility report module with JSON and Markdown output

2026-02-12 04:00:21 +08:00

test_scoring_integration.py

test(04-03): add unit and integration tests for scoring module

2026-02-11 20:54:39 +08:00

test_scoring.py

test(04-03): add unit and integration tests for scoring module

2026-02-11 20:54:39 +08:00

test_validation.py

test(06-03): unit tests for all validation modules

2026-02-12 04:50:17 +08:00

test_visualizations.py

feat(05-02): implement visualization module with matplotlib/seaborn plots

2026-02-12 03:57:50 +08:00