de678858cd
docs(phase-04): complete phase execution
2026-02-11 21:01:50 +08:00
386fbf51b2
docs(04-03): complete CLI score command and tests plan
...
- SUMMARY.md: CLI orchestration with checkpoint-restart + 10 comprehensive tests
- STATE.md: Updated position (Phase 4 complete), progress (75%), velocity, decisions
- Duration: 3 minutes, 2 tasks, 4 files (3 created, 1 modified)
2026-02-11 20:56:31 +08:00
c501951b0f
docs(04-02): complete QC and validation plan
...
- Add SUMMARY for quality control and positive control validation
- Update STATE.md: Plan 2 of 3 in Phase 04 complete
- Progress: 70% (14/20 plans complete)
- Decisions: scipy MAD outlier detection, PERCENT_RANK validation
2026-02-11 20:50:00 +08:00
71c4e8f736
docs(04-01): complete known gene compilation and weighted scoring plan
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- Known genes: 38 (10 OMIM Usher + 28 SYSCILIA SCGS v2 core)
- ScoringWeights.validate_sum() enforcing weight sum = 1.0
- NULL-preserving weighted average (weighted_sum / available_weight)
- Quality flags based on evidence_count thresholds
- Per-layer contributions for explainability
- 2 tasks, 4 files, 4 min duration
2026-02-11 20:44:09 +08:00
a52724aff4
docs(04): create phase plan for scoring and integration
2026-02-11 20:31:55 +08:00
32988c631f
docs(04): research multi-evidence weighted scoring with NULL preservation
2026-02-11 20:24:42 +08:00
