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docs(phase-02): complete phase execution

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gbanyan
2026-02-11 18:28:13 +08:00
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.planning/STATE.md
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See: .planning/PROJECT.md (updated 2026-02-11)
**Core value:** Produce a high-confidence, multi-evidence-backed ranked list of under-studied cilia/Usher candidate genes that is fully traceable — every gene's inclusion is explainable by specific evidence, and every gap is documented.
**Current focus:** Phase 1 complete — ready for Phase 2
**Current focus:** Phase 2 complete — ready for Phase 3
## Current Position
Phase: 2 of 6 (Prototype Evidence Layer)
Plan: 2 of 2 in current phase (phase complete)
Status: Phase 2 complete - ready for Phase 3
Last activity: 2026-02-11 — Completed 02-02: gnomAD evidence layer integration (DuckDB persistence, CLI, checkpoint-restart)
Status: Phase 2 complete — verified (9/9 must-haves, 3/3 requirements)
Last activity: 2026-02-11 — Phase 2 verified and complete
Progress: [█████░░░░░] 33.3% (2/6 phases complete)