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docs(phase-02): complete phase execution

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gbanyan
2026-02-11 18:28:13 +08:00
parent a0388cf4e1
commit ffb4963d2b
3 changed files with 133 additions and 7 deletions
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8
.planning/ROADMAP.md
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@@ -13,7 +13,7 @@ This pipeline transforms ~20,000 human protein-coding genes into a ranked, evide
Decimal phases appear between their surrounding integers in numeric order.
- [x] **Phase 1: Data Infrastructure** - Foundation for reproducible, modular pipeline
- [ ] **Phase 2: Prototype Evidence Layer** - Validate retrieval-to-storage architecture
- [x] **Phase 2: Prototype Evidence Layer** - Validate retrieval-to-storage architecture
- [ ] **Phase 3: Core Evidence Layers** - Parallel multi-source data retrieval
- [ ] **Phase 4: Scoring & Integration** - Multi-evidence weighted scoring system
- [ ] **Phase 5: Output & CLI** - User-facing interface and tiered results
@@ -51,8 +51,8 @@ Plans:
**Plans**: 2 plans
Plans:
- [ ] 02-01-PLAN.md -- gnomAD data model, download, coverage filter, and normalization
- [ ] 02-02-PLAN.md -- DuckDB persistence, CLI evidence command, and integration tests
- [x] 02-01-PLAN.md -- gnomAD data model, download, coverage filter, and normalization
- [x] 02-02-PLAN.md -- DuckDB persistence, CLI evidence command, and integration tests
### Phase 3: Core Evidence Layers
**Goal**: Complete all remaining evidence retrieval modules
@@ -119,7 +119,7 @@ Phases execute in numeric order: 1 → 2 → 3 → 4 → 5 → 6
| Phase | Plans Complete | Status | Completed |
|-------|----------------|--------|-----------|
| 1. Data Infrastructure | 4/4 | ✓ Complete | 2026-02-11 |
| 2. Prototype Evidence Layer | 0/2 | Planned | - |
| 2. Prototype Evidence Layer | 2/2 | ✓ Complete | 2026-02-11 |
| 3. Core Evidence Layers | 0/TBD | Not started | - |
| 4. Scoring & Integration | 0/TBD | Not started | - |
| 5. Output & CLI | 0/TBD | Not started | - |