docs: update gitignore to track report results, add README cross-links

- Revised .gitignore to ignore raw data/cache but track data/report/
  (candidates TSV/Parquet, plots, reproducibility metadata)
- Added zh↔en cross-links between README.md and README.en.md

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
This commit is contained in:
2026-02-13 05:57:27 +08:00
parent 674a9ae845
commit dc36730cb4
11 changed files with 18283 additions and 10 deletions

37
.gitignore vendored
View File

@@ -1,11 +1,24 @@
# Data files
data/
# === Raw data & intermediate files ===
data/cache/
data/gnomad/
data/annotation/
data/expression/
data/localization/
data/animal_models/
data/scoring/
# DuckDB
# DuckDB database (large, regeneratable)
*.duckdb
*.duckdb.wal
# Python
# Provenance JSON (regenerated on each run)
*.provenance.json
*.provenance.provenance.json
# === Keep report results ===
# data/report/ is NOT ignored — candidates.tsv, parquet, plots are tracked
# === Python ===
__pycache__/
*.pyc
*.pyo
@@ -18,23 +31,27 @@ dist/
build/
.eggs/
# Testing
# === Testing ===
.pytest_cache/
.coverage
htmlcov/
.tox/
# IDE
# === IDE ===
.vscode/
.idea/
*.swp
*.swo
*~
# Provenance files (not in data/)
/*.provenance.json
# Virtual environment
# === Virtual environment ===
.venv/
venv/
env/
# === OS ===
.DS_Store
Thumbs.db
# === Planning (internal) ===
.planning/