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docs(06-03): complete comprehensive validation report & CLI plan

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- Created 06-03-SUMMARY.md documenting plan execution
- Updated STATE.md:
  - Current Position: Phase 6 COMPLETE (21/21 plans)
  - Performance Metrics: Phase 06 3/3 plans, 10 min total, 3.3 min/plan avg
  - Added decisions for comprehensive validation report and weight tuning recommendations
  - Session Continuity: Stopped at 06-03-PLAN.md completion

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
This commit is contained in:
gbanyan
2026-02-12 04:53:05 +08:00
parent 5879ae9768
commit c97592d629
2 changed files with 343 additions and 8 deletions
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20
.planning/STATE.md
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@@ -10,16 +10,16 @@ See: .planning/PROJECT.md (updated 2026-02-11)
## Current Position
Phase: 6 of 6 (Validation)
Plan: 3 of 3 in current phase (plans 06-01, 06-02 complete)
Status: Phase 6 in progress — plans 06-01 and 06-02 complete
Last activity: 2026-02-12 — Completed 06-02: Sensitivity Analysis Module
Plan: 3 of 3 in current phase (all plans complete)
Status: Phase 6 COMPLETE — all validation plans complete
Last activity: 2026-02-12 — Completed 06-03: Comprehensive Validation Report & CLI
Progress: [██████████] 100.0% (20/20 plans complete across all phases)
Progress: [██████████] 100.0% (21/21 plans complete across all phases)
## Performance Metrics
**Velocity:**
- Total plans completed: 20
- Total plans completed: 21
- Average duration: 4.6 min
- Total execution time: 1.6 hours
@@ -32,7 +32,7 @@ Progress: [██████████] 100.0% (20/20 plans complete across a
| 03 - Core Evidence Layers | 6/6 | 52 min | 8.7 min/plan |
| 04 - Scoring Integration | 3/3 | 10 min | 3.3 min/plan |
| 05 - Output & CLI | 3/3 | 12 min | 4.0 min/plan |
| 06 - Validation | 2/3 | 5 min | 2.5 min/plan |
| 06 - Validation | 3/3 | 10 min | 3.3 min/plan |
**Recent Plan Details:**
| Plan | Duration | Tasks | Files |
@@ -45,6 +45,7 @@ Progress: [██████████] 100.0% (20/20 plans complete across a
| Phase 05 P03 | 3 min | 2 tasks | 3 files |
| Phase 06 P01 | 2 min | 2 tasks | 3 files |
| Phase 06 P02 | 3 min | 2 tasks | 2 files |
| Phase 06 P03 | 5 min | 2 tasks | 5 files |
## Accumulated Context
@@ -141,6 +142,9 @@ Recent decisions affecting current work:
- [06-02]: Top-N default 100 genes for ranking comparison (relevant for candidate prioritization)
- [06-02]: Minimum overlap 10 genes required for Spearman correlation (avoids meaningless correlations)
- [06-02]: Per-layer sensitivity tracking (most_sensitive_layer and most_robust_layer computed from mean rho)
- [06-03]: Comprehensive validation report combines positive, negative, and sensitivity prongs in single Markdown document
- [06-03]: Weight tuning recommendations include critical circular validation warnings (post-validation tuning invalidates controls)
- [06-03]: CLI validate command provides --skip-sensitivity flag for faster iteration during development
### Pending Todos
@@ -153,5 +157,5 @@ None yet.
## Session Continuity
Last session: 2026-02-12 - Phase 6 execution
Stopped at: Completed 06-02-PLAN.md (Sensitivity Analysis Module)
Resume file: .planning/phases/06-validation/06-02-SUMMARY.md
Stopped at: Completed 06-03-PLAN.md (Comprehensive Validation Report & CLI)
Resume file: .planning/phases/06-validation/06-03-SUMMARY.md