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docs(phase-05): complete phase execution

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gbanyan
2026-02-12 04:15:50 +08:00
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.planning/STATE.md
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@@ -5,14 +5,14 @@
See: .planning/PROJECT.md (updated 2026-02-11)
**Core value:** Produce a high-confidence, multi-evidence-backed ranked list of under-studied cilia/Usher candidate genes that is fully traceable — every gene's inclusion is explainable by specific evidence, and every gap is documented.
**Current focus:** Phase 4 complete — ready for Phase 5
**Current focus:** Phase 5 complete — ready for Phase 6
## Current Position
Phase: 5 of 6 (Output & CLI)
Plan: 3 of 3 in current phase (plans 05-01, 05-02, 05-03 complete)
Status: Phase 5 complete — 05-03 complete
Last activity: 2026-02-11 — Plan 05-03 executed and verified
Status: Phase 5 complete — verified (6/6 success criteria, 5/5 requirements)
Last activity: 2026-02-12 — Phase 5 verified and complete
Progress: [█████████░] 90.0% (18/20 plans complete across all phases)
@@ -139,6 +139,6 @@ None yet.
## Session Continuity
Last session: 2026-02-11 - Phase 5 execution
Stopped at: Plan 05-03 complete — CLI report command implemented with comprehensive CliRunner integration tests, Phase 5 complete
Resume file: .planning/phases/05-output-cli/05-03-SUMMARY.md
Last session: 2026-02-12 - Phase 5 execution
Stopped at: Phase 5 complete and verified — all 3 plans executed, 6/6 success criteria verified
Resume file: .planning/phases/05-output-cli/05-VERIFICATION.md