gbanyan/usher-exploring
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

docs(phase-05): complete phase execution

Browse Source
This commit is contained in:
gbanyan
2026-02-12 04:15:50 +08:00
parent 00e2836eb9
commit 964c1cebe8
3 changed files with 123 additions and 11 deletions
Download Patch File Download Diff File Expand all files Collapse all files

10
.planning/ROADMAP.md
View File

@@ -16,7 +16,7 @@ Decimal phases appear between their surrounding integers in numeric order.
- [x] **Phase 2: Prototype Evidence Layer** - Validate retrieval-to-storage architecture
- [x] **Phase 3: Core Evidence Layers** - Parallel multi-source data retrieval
- [x] **Phase 4: Scoring & Integration** - Multi-evidence weighted scoring system
- [ ] **Phase 5: Output & CLI** - User-facing interface and tiered results
- [x] **Phase 5: Output & CLI** - User-facing interface and tiered results
- [ ] **Phase 6: Validation** - Benchmark scoring against known genes
## Phase Details
@@ -106,9 +106,9 @@ Plans:
**Plans**: 3 plans
Plans:
- [ ] 05-01-PLAN.md -- Tiered candidate output with evidence summary and dual-format writer (TSV+Parquet)
- [ ] 05-02-PLAN.md -- Visualizations (score distribution, layer contributions, tier breakdown) and reproducibility report
- [ ] 05-03-PLAN.md -- CLI report command wiring all output modules with integration tests
- [x] 05-01-PLAN.md -- Tiered candidate output with evidence summary and dual-format writer (TSV+Parquet)
- [x] 05-02-PLAN.md -- Visualizations (score distribution, layer contributions, tier breakdown) and reproducibility report
- [x] 05-03-PLAN.md -- CLI report command wiring all output modules with integration tests
### Phase 6: Validation
**Goal**: Benchmark scoring system against positive and negative controls
@@ -134,5 +134,5 @@ Phases execute in numeric order: 1 -> 2 -> 3 -> 4 -> 5 -> 6
| 2. Prototype Evidence Layer | 2/2 | Complete | 2026-02-11 |
| 3. Core Evidence Layers | 6/6 | Complete | 2026-02-11 |
| 4. Scoring & Integration | 3/3 | Complete | 2026-02-11 |
| 5. Output & CLI | 0/3 | In Progress | - |
| 5. Output & CLI | 3/3 | Complete | 2026-02-12 |
| 6. Validation | 0/TBD | Not started | - |