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docs(06): create phase plan

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gbanyan
2026-02-12 04:33:17 +08:00
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.planning/ROADMAP.md
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@@ -119,9 +119,12 @@ Plans:
2. Negative control validation shows housekeeping genes are deprioritized (low scores, excluded from high-confidence tier)
3. Sensitivity analysis across parameter sweeps demonstrates rank stability for top candidates
4. Final scoring weights are tuned based on validation metrics and documented with rationale
**Plans**: TBD
**Plans**: 3 plans
Plans: (to be created during plan-phase)
Plans:
- [ ] 06-01-PLAN.md -- Negative control validation (housekeeping genes) and enhanced positive control metrics (recall@k)
- [ ] 06-02-PLAN.md -- Sensitivity analysis (weight perturbation sweeps with Spearman rank correlation)
- [ ] 06-03-PLAN.md -- Comprehensive validation report, CLI validate command, and unit tests
## Progress
@@ -135,4 +138,4 @@ Phases execute in numeric order: 1 -> 2 -> 3 -> 4 -> 5 -> 6
| 3. Core Evidence Layers | 6/6 | Complete | 2026-02-11 |
| 4. Scoring & Integration | 3/3 | Complete | 2026-02-11 |
| 5. Output & CLI | 3/3 | Complete | 2026-02-12 |
| 6. Validation | 0/TBD | Not started | - |
| 6. Validation | 0/3 | Not started | - |