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docs(phase-01): complete phase execution

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Phase 1 (Data Infrastructure) verified: 5/5 must-haves, 12/12 artifacts,
9/9 key links, 7/7 requirements satisfied. All 4 plans executed across
3 waves with 49 tests passing.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
This commit is contained in:
gbanyan
2026-02-11 16:50:30 +08:00
parent 102dcdbe84
commit 34437fdf0a
3 changed files with 205 additions and 9 deletions
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12
.planning/ROADMAP.md
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@@ -12,7 +12,7 @@ This pipeline transforms ~20,000 human protein-coding genes into a ranked, evide
Decimal phases appear between their surrounding integers in numeric order.
- [ ] **Phase 1: Data Infrastructure** - Foundation for reproducible, modular pipeline
- [x] **Phase 1: Data Infrastructure** - Foundation for reproducible, modular pipeline
- [ ] **Phase 2: Prototype Evidence Layer** - Validate retrieval-to-storage architecture
- [ ] **Phase 3: Core Evidence Layers** - Parallel multi-source data retrieval
- [ ] **Phase 4: Scoring & Integration** - Multi-evidence weighted scoring system
@@ -34,10 +34,10 @@ Decimal phases appear between their surrounding integers in numeric order.
**Plans**: 4 plans
Plans:
- [ ] 01-01-PLAN.md -- Project scaffold, config system, and base API client
- [ ] 01-02-PLAN.md -- Gene ID mapping with validation gates
- [ ] 01-03-PLAN.md -- DuckDB persistence and provenance tracking
- [ ] 01-04-PLAN.md -- CLI integration and end-to-end wiring
- [x] 01-01-PLAN.md -- Project scaffold, config system, and base API client
- [x] 01-02-PLAN.md -- Gene ID mapping with validation gates
- [x] 01-03-PLAN.md -- DuckDB persistence and provenance tracking
- [x] 01-04-PLAN.md -- CLI integration and end-to-end wiring
### Phase 2: Prototype Evidence Layer
**Goal**: Validate retrieval-to-storage pattern with single evidence layer
@@ -116,7 +116,7 @@ Phases execute in numeric order: 1 → 2 → 3 → 4 → 5 → 6
| Phase | Plans Complete | Status | Completed |
|-------|----------------|--------|-----------|
| 1. Data Infrastructure | 0/4 | Planning complete | - |
| 1. Data Infrastructure | 4/4 | ✓ Complete | 2026-02-11 |
| 2. Prototype Evidence Layer | 0/TBD | Not started | - |
| 3. Core Evidence Layers | 0/TBD | Not started | - |
| 4. Scoring & Integration | 0/TBD | Not started | - |