# Python and environments
__pycache__/
*.py[cod]
.venv/
env/
.env
.git-mcp/
.pytest_cache/
.mypy_cache/
.ruff_cache/
.coverage

# Notebooks
.ipynb_checkpoints/

# Editor
.DS_Store
.idea/
.vscode/

# Genomics data (avoid accidental commits)
*.bam
*.bai
*.sam
*.cram
*.crai
*.vcf
*.vcf.gz
*.vcf.gz.tbi
*.g.vcf
*.g.vcf.gz
*.g.vcf.gz.tbi
*.bed
*.bed.gz
*.bed.gz.tbi
*.fastq
*.fastq.gz
*.fq
*.fq.gz

# Reports / tmp
*.log
*.tmp
tmp/
reports/
runtime/